Publications

  • RBM-MHC: A Semi-Supervised Machine-Learning Method for Sample-Specific Prediction of Antigen Presentation by HLA-I Alleles
    Barbara Bravi, Jérôme Tubiana, Simona Cocco, Rémi Monasson, Thierry Mora, Aleksandra M.Walczak
    Cell Systems, 2021, Volume 12, Issue 2, Pages 195-202.e9
    https://doi.org/10.1016/j.cels.2020.11.005
  • Cyton2: A Model of Immune Cell Population Dynamics That Includes Familial Instructional Inheritance
    HoChan Cheon (ESR15), Andrey Kan, Giulio Prevedello, Simone Oostindie, Simon Dovedi, Edwin Hawkins, Julia Marchingo, Susanne Heinzel, Ken Duffy and Philip Hodgkin
    Frontiers in Bioinformatics, 2021
    https://doi.org/10.3389/fbinf.2021.723337
  • No evidence that HLA genotype influences the driver mutations that occur in cancer patients
    Noor Kherreh (ESR9), Siobhán Cleary & Cathal Seoighe
    Cancer Immunology, Immunotherapy, 2021
    https://doi.org/10.1007/s00262-021-03028-w
  • Step-by-step comparison of ordinary differential equation and agent-based approaches to pharmacokinetic-pharmacodynamic models
    Van Thuy Truong (ESR14), Paul G. Baverel, Grant D. Lythe, Paolo Vicini, James W. T. Yates, Vincent F. S. Dubois
    CPT: Pharmacometrics + Systems Pharmacology, 2021
    https://doi.org/10.1002/psp4.12703
  • Quantifying T Cell Cross-Reactivity: Influenza and Coronaviruses
    Jessica Gaevert, Daniel Luque Duque (ESR 10), Grant Lythe, Carmen Molina-París, Paul Thomas
    Viruses 2021, 13(9), 1786
    https://doi.org/10.3390/v13091786
  • Stochastic modelling of the T cell repertoire with epitope affinity
    Daniel F Luque Duque (ESR 10), Carmen Molina-Paris, Grant Lythe, Martin Lopez Garcia, Paul Thomas and Jessica Gaevert
    Journal of Immunology vol. 204 no. 1 Supplement 94.18″ Published online May 19, 2020.
    (Abstract submitted for the AAI Conference 2020)
    https://www.jimmunol.org/content/204/1_Supplement/94.18/tab-article-info
  • Resolving Fates and Single-Cell Transcriptomes of Hematopoietic Stem Cell Clones by PolyloxExpress Barcoding
    Weike Pei et al (including Alessandro Greco (ESR 2), Thomas Höfer, Hans-Reimer Rodewald)
    Cell Stem Cell Volume 27, issue 3, p383-395, 3 Sept 2020
    https://doi.org/10.1016/j.stem.2020.07.018
  • Using Cre-recombinase-driven Polyloxbarcoding for in vivo fate mapping in mice
    Weike Pei, Xi Wang, Jens Rössler, Thorsten B. Feyerabend, Thomas Höfer & Hans-Reimer Rodewald
    Nature Protocols 14, 1820–1840 (2019)
    https://doi.org/10.1038/s41596-019-0163-5
  • IL7 receptor signaling in T cells: A mathematical modeling perspective
    Jung-Hyun Park, Adam T. Waickman, Joseph Reynolds, Mario Castro, Carmen Molina-París
    WIREs Systems Biology and Medicine 11:e1447 (2019)
    https://doi.org/10.1002/wsbm.1447
  • Fate of a Naive T Cell: A Stochastic Journey
    Luis de la Higuera, Martín López-García, Mario Castro, Niloufar Abourashchi, Grant Lythe and Carmen Molina-París
    Frontiers in Immunology, 10:194 (2019)
    https://doi.org/10.3389/fimmu.2019.00194