RBM-MHC: A Semi-Supervised Machine-Learning Method for Sample-Specific Prediction of Antigen Presentation by HLA-I Alleles
Barbara Bravi, Jérôme Tubiana, Simona Cocco, Rémi Monasson, Thierry Mora, Aleksandra M.Walczak Cell Systems, 2021, Volume 12, Issue 2, Pages 195-202.e9 https://doi.org/10.1016/j.cels.2020.11.005
Cyton2: A Model of Immune Cell Population Dynamics That Includes Familial Instructional Inheritance HoChan Cheon (ESR15), Andrey Kan, Giulio Prevedello, Simone Oostindie, Simon Dovedi, Edwin Hawkins, Julia Marchingo, Susanne Heinzel, Ken Duffy and Philip Hodgkin Frontiers in Bioinformatics, 2021 https://doi.org/10.3389/fbinf.2021.723337
No evidence that HLA genotype influences the driver mutations that occur in cancer patients Noor Kherreh (ESR9), Siobhán Cleary & Cathal Seoighe Cancer Immunology, Immunotherapy, 2021 https://doi.org/10.1007/s00262-021-03028-w
Step-by-step comparison of ordinary differential equation and agent-based approaches to pharmacokinetic-pharmacodynamic models Van Thuy Truong (ESR14), Paul G. Baverel, Grant D. Lythe, Paolo Vicini, James W. T. Yates, Vincent F. S. Dubois CPT: Pharmacometrics + Systems Pharmacology, 2021 https://doi.org/10.1002/psp4.12703
Quantifying T Cell Cross-Reactivity: Influenza and Coronaviruses
Jessica Gaevert, Daniel Luque Duque (ESR 10), Grant Lythe, Carmen Molina-París, Paul Thomas Viruses 2021, 13(9), 1786 https://doi.org/10.3390/v13091786
Stochastic modelling of the T cell repertoire with epitope affinity Daniel F Luque Duque (ESR 10), Carmen Molina-Paris, Grant Lythe, Martin Lopez Garcia, Paul Thomas and Jessica Gaevert Journal of Immunology vol. 204 no. 1 Supplement 94.18″ Published online May 19, 2020.
(Abstract submitted for the AAI Conference 2020) https://www.jimmunol.org/content/204/1_Supplement/94.18/tab-article-info
Resolving Fates and Single-Cell Transcriptomes of Hematopoietic Stem Cell Clones by PolyloxExpress Barcoding
Weike Pei et al (including Alessandro Greco (ESR 2), Thomas Höfer, Hans-Reimer Rodewald) Cell Stem Cell Volume 27, issue 3, p383-395, 3 Sept 2020 https://doi.org/10.1016/j.stem.2020.07.018
Current estimates of T cell kinetics in humans
Derek C.Macallan, Robert Busch, Becca Asquith Current Opinion in Systems Biology Volume 18, December 2019, Pages 77-86 https://doi.org/10.1016/j.coisb.2019.10.002
Using Cre-recombinase-driven Polyloxbarcoding for in vivo fate mapping in mice
Weike Pei, Xi Wang, Jens Rössler, Thorsten B. Feyerabend, Thomas Höfer & Hans-Reimer Rodewald Nature Protocols 14, 1820–1840 (2019) https://doi.org/10.1038/s41596-019-0163-5
IL7 receptor signaling in T cells: A mathematical modeling perspective
Jung-Hyun Park, Adam T. Waickman, Joseph Reynolds, Mario Castro, Carmen Molina-París WIREs Systems Biology and Medicine 11:e1447 (2019) https://doi.org/10.1002/wsbm.1447
Fate of a Naive T Cell: A Stochastic Journey
Luis de la Higuera, Martín López-García, Mario Castro, Niloufar Abourashchi, Grant Lythe and Carmen Molina-París Frontiers in Immunology, 10:194 (2019) https://doi.org/10.3389/fimmu.2019.00194
Differentiation-based model of hematopoietic stem cell functions and lineage pathways
Thomas Höfer and Hans-Reimer Rodewald Blood 132:1106-1113 (2018) https://doi.org/10.1182/blood-2018-03-791517